PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_14684.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 239aa    MW: 26823.7 Da    PI: 5.3467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_14684.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.8e-172069255
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             +y GVr+++ +gr++AeIr  +     +  r++lg+f+taeeAa a++  ++++ g
  Rsa1.0_14684.1_g00001.1 20 KYLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAALAYDVSARSISG 69
                             799******.**********66.....34*******************99998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-292083IPR001471AP2/ERF domain
PfamPF008473.1E-102065IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-262076IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-192077IPR016177DNA-binding domain
CDDcd000182.57E-282076No hitNo description
PROSITE profilePS5103220.2312077IPR001471AP2/ERF domain
PRINTSPR003678.5E-92132IPR001471AP2/ERF domain
PRINTSPR003678.5E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLKSRNKSKS KQEKKSEEVK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAALAY  60
DVSARSISGS LAKTNFFYTD NISLQTQPQE FLQSSSDKAF FVNPVAPSKP NMSLGSSSFC  120
FLQENNHFVA GPVSSYIQEQ QLSADLTNSF SHCYDDDHHH VGKSKEISLP SLPNDMSSSL  180
FGRQDKTEED GDADKMKLGS VLSDEGHCFE YDFLLSGMPL SLLSDYNEDL PQIIGSSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1716831078Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_14684.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439956.11e-157PREDICTED: ethylene-responsive transcription factor ERF088
SwissprotQ3E7037e-97ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A3P5YM101e-136A0A3P5YM10_BRACM; Uncharacterized protein
STRINGBra026949.1-P1e-133(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.12e-89ERF family protein