PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_14552.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 134aa MW: 15180.2 Da PI: 6.3361 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40.3 | 9.4e-13 | 65 | 133 | 2 | 67 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikev.diykvePwdLpkkvkaeekewyfFskrdkk 67 p+G++F+Ptdee++ e+L++k+ + + ++++i +v di+ ++P++Lp v+++ ++++fF k+ ++ Rsa1.0_14552.1_g00001.1 65 PKGVKFNPTDEEVI-EHLQAKCGIDGsklnHFIQDFIFSVdDINFTHPQNLP-GVNKDGTSTFFFNKTVHA 133 89************.99***9776663343333446666769**********.677888999***987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-13 | 51 | 129 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.717 | 64 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MLLKSWKLTL GRTWIVDGPW IVENVKNVSM SSDLQIEDCG AYINCPNCGH RNDNRNVMTP 60 WPGIPKGVKF NPTDEEVIEH LQAKCGIDGS KLNHFIQDFI FSVDDINFTH PQNLPGVNKD 120 GTSTFFFNKT VHAY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_14552.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018473718.1 | 2e-82 | PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 8-like | ||||
TrEMBL | A0A3P6A2E6 | 4e-77 | A0A3P6A2E6_BRAOL; Uncharacterized protein | ||||
STRING | Bra006257.1-P | 3e-73 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM23562 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 2e-68 | NAC domain containing protein 85 |