PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_14050.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 242aa    MW: 27596.6 Da    PI: 8.8488
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_14050.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151057148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd ll +++ ++G g W+ ++ +  ++R++k+c++rw++yl
  Rsa1.0_14050.1_g00002.1 10 KGAWTAEEDSLLRQCIDKYGEGKWHQVPLRAELNRCRKSCRLRWLNYL 57
                             79********************************************97 PP
2Myb_DNA-binding21.74.6e-0763101148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg+   +E +ll++++k+lG++        ++ gRt++++k++w+++l
  Rsa1.0_14050.1_g00002.1  63 RGKLNSDEVDLLLRLHKLLGNR--------LP-GRTANDVKNYWNTHL 101
                              5677789999999999999999........**.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.666561IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-20559IPR009057Homeodomain-like
SuperFamilySSF466891.19E-21797IPR009057Homeodomain-like
SMARTSM007178.3E-14959IPR001005SANT/Myb domain
PfamPF002491.2E-141057IPR001005SANT/Myb domain
CDDcd001676.27E-101257No hitNo description
Gene3DG3DSA:1.10.10.605.6E-1260104IPR009057Homeodomain-like
PROSITE profilePS5129412.03962105IPR017930Myb domain
SMARTSM007171.3E-462103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEGSSKGLRK GAWTAEEDSL LRQCIDKYGE GKWHQVPLRA ELNRCRKSCR LRWLNYLKPS  60
IKRGKLNSDE VDLLLRLHKL LGNRLPGRTA NDVKNYWNTH LSKKHEPGCK TQMKKEKRNI  120
PCSSITLAQK IDVFKPRPRS FTVNNGCSHI IGMPKPDVVP LCLRFNNTKN VCENIATCNK  180
DDDKSELVCN LMDGQNMWWE SLLDESQDPA ALYPEATATK KAVTSEFDVD HLWSLLDGET  240
GT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-1781045107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_14050.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7061950.0KR706195.1 Raphanus sativus cultivar Bordeaux anthocyanin regulator (MYB1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442946.11e-170PREDICTED: transcription factor MYB114-like
SwissprotQ9ZTC31e-108MYB90_ARATH; Transcription factor MYB90
TrEMBLA0A0H3XWN61e-159A0A0H3XWN6_RAPSA; Anthocyanin regulator
STRINGBo6g100940.11e-151(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66390.11e-107myb domain protein 90
Publications ? help Back to Top
  1. Ilk N,Ding J,Ihnatowicz A,Koornneef M,Reymond M
    Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2.
    New Phytol., 2015. 206(1): p. 422-35
    [PMID:25425527]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Nemie-Feyissa D,Heidari B,Blaise M,Lillo C
    Analysis of interactions between heterologously produced bHLH and MYB proteins that regulate anthocyanin biosynthesis: quantitative interaction kinetics by Microscale Thermophoresis.
    Phytochemistry, 2015. 111: p. 21-6
    [PMID:25659750]
  4. Bac-Molenaar JA,Fradin EF,Rienstra JA,Vreugdenhil D,Keurentjes JJ
    GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(11): p. e0143212
    [PMID:26588092]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Li N, et al.
    The heterologous expression of Arabidopsis PAP2 induces anthocyanin accumulation and inhibits plant growth in tomato.
    Funct. Integr. Genomics, 2018. 18(3): p. 341-353
    [PMID:29372433]