PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_13977.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 348aa    MW: 39957.7 Da    PI: 6.4187
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_13977.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.3e-49101521129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 
                              lppGfrFhP+deelv++yL++k+++k+l+++               + e+d++ +ePw+Lp  +k + kewyfFs rd+ky tg r
  Rsa1.0_13977.1_g00001.1  10 LPPGFRFHPSDEELVCHYLCNKIRAKSLHCNIedddvdeaskdatDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYCTGYR 95 
                              79*************************555334567777888874599*************87788999***************** PP

                      NAM  74 knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              +nrat sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  Rsa1.0_13977.1_g00001.1  96 TNRATLSGYWKATGKDRSVIDPrTRQLVGMRKTLVFYRNRAPHGIKTTWIMHEFRLE 152
                              ********************9967778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-568170IPR003441NAC domain
PROSITE profilePS5100553.42710170IPR003441NAC domain
PfamPF023651.7E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGLKDIGSTL PPGFRFHPSD EELVCHYLCN KIRAKSLHCN IEDDDVDEAS KDATDLVEID  60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY CTGYRTNRAT LSGYWKATGK DRSVIDPRTR  120
QLVGMRKTLV FYRNRAPHGI KTTWIMHEFR LECPNMLPKE DWVLCRVFNK GRDLSLQDNK  180
NDHLTQRFAF NDAPDLNYAP NYNNQLHPLL SSSPSTTIDP LHHLDQWGQL MKQPSRTTDH  240
PYHHRCKHQT IACGWEQMMI GSMSSSSTHG HDHESLLNLL YADNNNDINV TDDQYNQNYE  300
KILLPSDSTS LDHDKICVGS SSDGGMVSDL HMECGGLSFG TDNPLSFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-471017015168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_13977.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382740.0KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450111.10.0PREDICTED: NAC domain-containing protein 21/22-like isoform X1
TrEMBLA0A397YBT00.0A0A397YBT0_BRACM; Uncharacterized protein
STRINGBo8g054390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-158NAC domain containing protein 74