PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_13797.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 222aa MW: 25240.6 Da PI: 8.2597 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.1 | 1.1e-50 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp GfrFhPtdeelv++yL+++++++++++ vi+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nr++ +gyWkat Rsa1.0_13797.1_g00001.1 7 LPEGFRFHPTDEELVKFYLCRRCASEPISA-PVIAEIDLYKFNPWELPEMALYGEKEWYFFSHRDRKYPNGSRPNRSAGTGYWKAT 91 699*************************99.89***************7666789******************************* PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk++ + ++ g+kk Lvfy g+ap+g+kt+W+mheyrl Rsa1.0_13797.1_g00001.1 92 GADKPIGK--PKTLGIKKALVFYAGKAPRGVKTNWIMHEYRL 131 ******98..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-60 | 3 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.81 | 7 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-26 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MKAELNLPEG FRFHPTDEEL VKFYLCRRCA SEPISAPVIA EIDLYKFNPW ELPEMALYGE 60 KEWYFFSHRD RKYPNGSRPN RSAGTGYWKA TGADKPIGKP KTLGIKKALV FYAGKAPRGV 120 KTNWIMHEYR LANVDRSASS SNKKNSLRLD DWVLCRIYNK KGTMEKCYPV DEGSTSESKC 180 SSHVVSPGVT CSDNCESKWV DDLEDAFVFG SIESLRNDAF VP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-82 | 2 | 166 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_13797.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By low-oxygen stress. {ECO:0000269|PubMed:19176720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY245879 | 0.0 | AY245879.1 Brassica napus NAC-domain protein 1-1 (NAC1-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018491032.1 | 1e-153 | PREDICTED: NAC domain-containing protein 102 isoform X2 | ||||
Swissprot | Q8H115 | 1e-135 | NA102_ARATH; NAC domain-containing protein 102 | ||||
TrEMBL | A0A3P6BC28 | 1e-145 | A0A3P6BC28_BRAOL; Uncharacterized protein | ||||
STRING | XP_006394242.1 | 1e-140 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63790.1 | 1e-137 | NAC domain containing protein 102 |
Publications ? help Back to Top | |||
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