PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_13727.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 302aa    MW: 34411.7 Da    PI: 6.0809
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_13727.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.41.3e-34141052102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              F+ k+y++++d++++ li+w    nsfvv d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F 
  Rsa1.0_13727.1_g00001.1  14 FVAKTYQMVNDPSTDWLITWGPAHNSFVVADPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFL 90 
                              9********************999*****************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+++ll++i r+k+
  Rsa1.0_13727.1_g00001.1  91 RGQTHLLKNIGRRKH 105
                              ************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-37498IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5610103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3311103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.5E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-185264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEDKNNNTNV IAPFVAKTYQ MVNDPSTDWL ITWGPAHNSF VVADPLDFSQ RILPAYFKHN  60
NFSSFVRQLN TYGFRKVDPD RWEFANEHFL RGQTHLLKNI GRRKHARGMM YGQEVEDNGE  120
VVKEIERLKD EQRELELEIE KMSQRIEATE KRPEQMMAFL YKVVDDPDLL PRMMLEKERT  180
KQVSDKKKRR VTVKSEDQEE ENGRVFGVVS PSPSPPENSM GWVVPMRFGS YNETGLVVNS  240
MVSTSSRSSS LTSTLTLPDS VNGGCGSVQG ETRDKEAATF GGVVESNPQT PPYPFSLFRG  300
GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-251110317120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185189KKKRR
2185190KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_13727.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207464e-33AB020746.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOB24.
GenBankAY0561114e-33AY056111.1 Arabidopsis thaliana AT3g24520/MOB24_5 mRNA, complete cds.
GenBankAY0726144e-33AY072614.1 Arabidopsis thaliana AT3g24520/MOB24_5 mRNA, complete cds.
GenBankCP0026864e-33CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankHQ3223824e-33HQ322382.1 Arabidopsis thaliana heat shock factor (HSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490603.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV521e-141HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A078HM681e-172A0A078HM68_BRANA; BnaC07g07130D protein
STRINGBo7g033000.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-141heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]