PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_12930.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 156aa MW: 17486.6 Da PI: 4.8398 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.5 | 5e-16 | 2 | 44 | 9 | 55 |
AP2 9 dkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++ +g+W++eIrdp + +r++lg+f taeeAa a++ a+k+++g Rsa1.0_12930.1_g00002.1 2 RP-WGKWASEIRDPE----KgARVWLGTFNTAEEAAMAYDVAAKRIRG 44 56.**********73....24************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.863 | 1 | 52 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-28 | 1 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.64E-31 | 1 | 54 | No hit | No description |
SMART | SM00380 | 2.2E-29 | 1 | 58 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-19 | 2 | 53 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.6E-10 | 2 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
KRPWGKWASE IRDPEKGARV WLGTFNTAEE AAMAYDVAAK RIRGDKAKLN FPDLLHNPPP 60 AIPTLPRQDN QPPVKKLCVS SQSELTQSSF PGECIGFGNG DEFRNMSYGY DLKQQISSLE 120 SFLELDGITP EHPSQLHETG SEVDLWMLHD VIASYE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-20 | 1 | 52 | 8 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 9e-20 | 1 | 52 | 11 | 63 | ATERF1 |
3gcc_A | 9e-20 | 1 | 52 | 11 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_12930.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189317 | 1e-156 | AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486289.1 | 1e-105 | PREDICTED: ethylene-responsive transcription factor RAP2-3-like | ||||
Swissprot | P42736 | 3e-79 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A078ITY7 | 6e-93 | A0A078ITY7_BRANA; BnaCnng27470D protein | ||||
TrEMBL | A0A398A4X3 | 5e-93 | A0A398A4X3_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3N6TP03 | 4e-93 | A0A3N6TP03_BRACR; Uncharacterized protein | ||||
TrEMBL | M4CBR0 | 5e-93 | M4CBR0_BRARP; Uncharacterized protein | ||||
STRING | Bra001640.1-P | 8e-94 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-71 | ethylene-responsive element binding protein |