PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_12274.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 352aa    MW: 40828.3 Da    PI: 8.2693
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_12274.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23.1e-1156103154
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                              ++ykGV ++  +g W A+I++      +kr++lg+f +a eAa  ++ a  kl+
  Rsa1.0_12274.1_g00001.1  56 TKYKGVVQHQ-NGHWGAQIYVD-----HKRIWLGTFKSAAEAAMGYDSASIKLR 103
                              69*****999.8*********3.....4********************999987 PP
2B388.74.8e-28180275184
                              EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                              f+k+lt sdv+k++rlv+pkk+a ++            +g+  e+++++++d++ r+W+++++y+++s+++vlt+GW +Fvk+++L
  Rsa1.0_12274.1_g00001.1 180 FQKELTASDVGKLNRLVIPKKYAVKYlpslsddqsereEGEIVEDVEVVFYDREMRQWKFRYCYWRSSQSFVLTRGWIGFVKEKRL 265
                              99*****************************99887775555699***************************************** PP

                              -TT-EEEEEE CS
                       B3  75 kegDfvvFkl 84 
                              ke+D+++F+ 
  Rsa1.0_12274.1_g00001.1 266 KEKDVITFYT 275
                              ********92 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.30E-2256116No hitNo description
PROSITE profilePS5103216.62157114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-1557114IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-1457115IPR016177DNA-binding domain
SMARTSM003801.5E-1657120IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.3E-31175285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-26178276IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-24179274No hitNo description
PROSITE profilePS5086312.689180297IPR003340B3 DNA binding domain
SMARTSM010191.4E-20180297IPR003340B3 DNA binding domain
PfamPF023623.3E-25180275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MFLVSSVIPM DVSKSETLNT NDSYLPVKKR MRLNEPPTDK ALVSTVIDKV SFSNNTKYKG  60
VVQHQNGHWG AQIYVDHKRI WLGTFKSAAE AAMGYDSASI KLRSFDTNSY RNFPWSDLTV  120
HEPVFQKGYT TEAVLNMIKD GSYPREFQEF LKNRSQVAVG SKQSRRDEEP NKCFSCTQLF  180
QKELTASDVG KLNRLVIPKK YAVKYLPSLS DDQSEREEGE IVEDVEVVFY DREMRQWKFR  240
YCYWRSSQSF VLTRGWIGFV KEKRLKEKDV ITFYTCDVPT LEGQSKNFLM VDVRRFSDNE  300
TVVTDEEVNK IVHKSFDDVM KPDNFSKSKL GEEETKPEEN KGGFMLFGVR IQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2317927313100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_12274.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486600.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_018487331.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-161RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A3P6FPW30.0A0A3P6FPW3_BRAOL; Uncharacterized protein
STRINGBo6g022280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-151RAV family protein