PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_11966.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GRAS | ||||||||
Protein Properties | Length: 232aa MW: 24543.1 Da PI: 4.7821 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 134.7 | 9.7e-42 | 60 | 231 | 2 | 171 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ++++le+A+a+++g++e a+++Lar+s++ s+++++ ++l+ +++ AL++r++ +++++++ +e++++++l++e+ Rsa1.0_11966.1_g00001.1 60 RQTVLEIATAIAEGKTEIASEILARVSQTPSQRRNSEEKLVDFMVTALRSRINP--------AAAESSAQLYGKEHINSTQLLYEL 137 6889*************************************************9........22233333359************* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg........skeeleetge 163 sP++k+++++aN aIl+a + ++ H++Df+i++G+Q+ +Ll+aL++R+ ++pp ++iT+v + + g + +l+++g+ Rsa1.0_11966.1_g00001.1 138 SPCFKLGFMAANLAILDANDDATSFHVVDFEIGEGGQYFNLLHALSTRRsgKNPPVVKITAVTNVSDGfsvaggdrGEGRLKTVGD 223 **********************************************99977779**********8888999999999999****** PP GRAS 164 rLakfAee 171 rL+++ ++ Rsa1.0_11966.1_g00001.1 224 RLSELGDR 231 ***99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 25.15 | 33 | 232 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.4E-39 | 60 | 231 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
DEGGDDDVSV ITHSNSDWLH GLMTPNPNPN PVLSSSSPSS SSSSSSPSTA STTTSAACSR 60 QTVLEIATAI AEGKTEIASE ILARVSQTPS QRRNSEEKLV DFMVTALRSR INPAAAESSA 120 QLYGKEHINS TQLLYELSPC FKLGFMAANL AILDANDDAT SFHVVDFEIG EGGQYFNLLH 180 ALSTRRSGKN PPVVKITAVT NVSDGFSVAG GDRGEGRLKT VGDRLSELGD RL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_11966.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018457492.1 | 1e-163 | PREDICTED: scarecrow-like protein 8 | ||||
Swissprot | Q9FYR7 | 2e-87 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A0D3E8K5 | 1e-113 | A0A0D3E8K5_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g083130.1 | 1e-113 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4350 | 28 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 6e-78 | SCARECROW-like 8 |