PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_11877.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 280aa    MW: 31419.2 Da    PI: 9.6654
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_11877.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.77.8e-0959855128
                      NAM  55 ekewyfFskrdkkya....tgkrknra....tksgyWkatgkdkevlsk.kgelvglkktLvfy...kgrapkge........... 117
                              ++ew++F++r++ +     +g++++r      + g Wk   k k + ++ +ge++g k+tL f    k   +k +           
  Rsa1.0_11877.1_g00001.1   5 KNEWFYFVTRSQVSVknigRGRNSKRRvngdNDGGSWKPNAK-KYIEDEeTGETIGKKQTLKFTksdK---KKQKrgdgtsvvvpg 86 
                              689****999988773343344444432333559****9988.56665559999**********5542...322222344555555 PP

                      NAM 118 .ktdWvmheyrl 128
                               +++W+mhey+l
  Rsa1.0_11877.1_g00001.1  87 sNSSWIMHEYSL 98 
                              599*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.1821115IPR003441NAC domain
SuperFamilySSF1019419.55E-143113IPR003441NAC domain
PfamPF023659.8E-8898IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
PLFRKNEWFY FVTRSQVSVK NIGRGRNSKR RVNGDNDGGS WKPNAKKYIE DEETGETIGK  60
KQTLKFTKSD KKKQKRGDGT SVVVPGSNSS WIMHEYSLPD ENTFQELVLC KIRKISNSKD  120
EDDHHESIPA SSSEPQRTNT DHEIAPAPSS LEHQQPKANK LVSLRIIITK SPRSGSRMDK  180
YTSNGLEALM IMTNTEDQEQ PPVSTTTPAH MNVVAPARPG LKFSPEELDD HSTLTNMKSA  240
TLRAYTVKIL SDLSERLFSS KSSQKSSIVI CGDFFNSNKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_11877.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465923.11e-113PREDICTED: NAC domain-containing protein 35-like
TrEMBLA0A0D3AL362e-72A0A0D3AL36_BRAOL; Uncharacterized protein
STRINGBo2g027110.14e-73(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.12e-08NAC domain containing protein 35