PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_11380.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 23062.7 Da PI: 6.5175 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.3 | 4.4e-09 | 60 | 100 | 12 | 55 |
AP2 12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +g+ A Irdp++ r +lg+f+taeeAa+a+ aa +k+ g Rsa1.0_11380.1_g00002.1 60 WGKRTAAIRDPRK---GSREWLGTFDTAEEAARAYNAAERKICG 100 6666799***854...3999******************999866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.75 | 43 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-12 | 58 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-18 | 58 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-12 | 58 | 103 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.91E-19 | 58 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MDFAWASTLD EFDVDDCEED DVFADVNPFV FTAGTTKPVA SSPLTGIDSN LKSFELGRPW 60 GKRTAAIRDP RKGSREWLGT FDTAEEAARA YNAAERKICG NKAKVISQKR SAGKTSNLKK 120 PVAKQNQSPA LIQQPTHVSQ YCNNSFSDVS FMEPKPQMYN NQFFDVGGNS GYQYFSSDQG 180 SNSLYCYEHK TSNVYYMYIL ASKLFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_11380.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018491063.1 | 5e-59 | PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-2-like | ||||
Refseq | XP_018491064.1 | 5e-59 | PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-2-like | ||||
Swissprot | Q9LUM4 | 2e-56 | RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | A0A178VM98 | 6e-55 | A0A178VM98_ARATH; RAP2.2 | ||||
TrEMBL | R0G5V1 | 8e-55 | R0G5V1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1582s0005.1.p | 5e-56 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.2 | 1e-53 | related to AP2 2 |