PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_10402.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 184aa    MW: 19848.4 Da    PI: 10.0813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_10402.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-192171256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+ta++Aa+a++aa+++++g+
  Rsa1.0_10402.1_g00001.1 21 RYRGVRKRP-WGRYAAEIRDPRK---KTRVWLGTFDTAQQAARAYDAAAREFRGA 71
                             59*******.**********843...6*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-322179IPR001471AP2/ERF domain
CDDcd000182.38E-202180No hitNo description
PfamPF008471.1E-132170IPR001471AP2/ERF domain
PROSITE profilePS5103224.3422178IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-222180IPR016177DNA-binding domain
SMARTSM003801.4E-362184IPR001471AP2/ERF domain
PRINTSPR003673.5E-112233IPR001471AP2/ERF domain
PRINTSPR003673.5E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MTKMGLKPDP SPIQSNAKEI RYRGVRKRPW GRYAAEIRDP RKKTRVWLGT FDTAQQAARA  60
YDAAAREFRG AKAKTNFPTS LELKANYGGY SRSPSQSSTV DSASPTAARL VTPPQLELSL  120
GNGGACYQIP VARPVYFFNM TAFPLAATCG VQSESDSSSV VDFEGGAGKT SQPLDLDLNL  180
APPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2217831077Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00202DAPTransfer from AT1G53170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_10402.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447839.11e-133PREDICTED: ethylene-responsive transcription factor 8-like
SwissprotQ9MAI51e-74ERF79_ARATH; Ethylene-responsive transcription factor 8
TrEMBLA0A3P6BVV61e-103A0A3P6BVV6_BRACM; Uncharacterized protein
STRINGBra030957.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.14e-55ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Cao FY, et al.
    Arabidopsis ETHYLENE RESPONSE FACTOR 8 (ERF8) has dual functions in ABA signaling and immunity.
    BMC Plant Biol., 2018. 18(1): p. 211
    [PMID:30261844]