PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_10397.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 54aa MW: 6191.68 Da PI: 4.4762 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.3 | 2.6e-11 | 21 | 52 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd +lv+ v +G +W+ Iar g Rsa1.0_10397.1_g00001.1 21 KGPWTEEEDAILVNFVSIHGDARWNHIARSAG 52 79***************************877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-11 | 15 | 50 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.686 | 16 | 54 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.76E-9 | 16 | 50 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-9 | 21 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.49E-7 | 23 | 49 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 54 aa Download sequence Send to blast |
MENYERNLNS PAHEEDSDVR KGPWTEEEDA ILVNFVSIHG DARWNHIARS AGIN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_10397.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ144191 | 9e-61 | KJ144191.1 Brassica rapa subsp. chinensis MYB transcription factor (MYB) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481452.1 | 3e-30 | PREDICTED: transcription factor MYB57-like | ||||
TrEMBL | A0A078GQN5 | 7e-28 | A0A078GQN5_BRANA; BnaC04g51450D protein | ||||
TrEMBL | A0A0D3C6P0 | 8e-28 | A0A0D3C6P0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6D1C8 | 8e-28 | A0A3P6D1C8_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g198510.1 | 1e-28 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47190.1 | 3e-29 | myb domain protein 2 |