PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_10218.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 232aa    MW: 25907.6 Da    PI: 6.7214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_10218.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-172269148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT eEd++l+++++ +G g W+t a+  g++Rt+k+c++rw++yl
  Rsa1.0_10218.1_g00001.1 22 KGPWTMEEDLILINYIANHGDGVWNTLAKSAGLKRTGKSCRLRWLNYL 69
                             79********************************************97 PP
2Myb_DNA-binding52.79.6e-1775118146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ T+eE++ + ++++++G++ W++Ia++++ gRt++++k++w++
  Rsa1.0_10218.1_g00001.1  75 RGNITPEEQLTIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 118
                              7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7941769IPR017930Myb domain
SuperFamilySSF466891.12E-2920116IPR009057Homeodomain-like
SMARTSM007172.3E-122171IPR001005SANT/Myb domain
PfamPF002493.1E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-222376IPR009057Homeodomain-like
CDDcd001677.43E-102469No hitNo description
PROSITE profilePS5129424.29170124IPR017930Myb domain
SMARTSM007171.5E-1474122IPR001005SANT/Myb domain
PfamPF002491.0E-1575118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2477123IPR009057Homeodomain-like
CDDcd001671.89E-1179118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEKIGGISSG GTGSSGEAEV RKGPWTMEED LILINYIANH GDGVWNTLAK SAGLKRTGKS  60
CRLRWLNYLR PDVRRGNITP EEQLTIMELH AKWGNRWSKI AKHLPGRTDN EIKNFWRTRI  120
QKYIKQTDVT ATTTSSVGSH HSSEINDQAA STSNHNVFCT QDQAMETYSP STTSYQHTNM  180
DFNYSNYSAS AVTGTATATA DYSIPMTVDD QTGENYWGMD DIWSSMHLLN GN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25161241108B-MYB
1h8a_C5e-251912424128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_10218.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7039950.0JN703995.1 Brassica oleracea MYB1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454766.11e-174PREDICTED: transcription factor MYB21
SwissprotQ9LK951e-149MYB21_ARATH; Transcription factor MYB21
TrEMBLM4FD971e-154M4FD97_BRARP; Uncharacterized protein
STRINGBra039067.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-131myb domain protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Su Z, et al.
    Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis.
    Plant Cell, 2013. 25(10): p. 3785-807
    [PMID:24179129]
  3. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  4. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  5. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]