PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09705.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 457aa    MW: 52757.2 Da    PI: 4.725
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09705.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.84.5e-19161644128
                      NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk... 79 
                              G++F+P d+el++eyL +k+egk+  +   i+  d+y+ ePw L++ + +  +++ewy+F++r + ++     gk+++r +t+   
  Rsa1.0_09705.1_g00001.1  16 GIQFQPYDDELINEYLIPKLEGKPRGE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYFVTRTQLSKkkigCGKKAKRkITRdnd 98 
                              99**********************655...9999**********86444444889*****99977655334456677774444666 PP

                      NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfy......kgrapkge...........ktdWvmheyrl 128
                              sg Wka  k  ++++k  + ++g  +tL+f       k+++++g            + +W+m ey l
  Rsa1.0_09705.1_g00001.1  99 SGSWKANAK-GDIKDKeAKMVIGEHQTLAFVksevnnKKKQKSGDgtscdvvvpgsENSWIMTEYML 164
                              9****9987.67777646778**********665554222222223344444444477888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-206180IPR003441NAC domain
PROSITE profilePS5100523.70213182IPR003441NAC domain
PfamPF023656.4E-1416163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MYEYNDMYEY NDEDGGIQFQ PYDDELINEY LIPKLEGKPR GEITMKDVYS KEPWLLDHPM  60
GSFFKKNEWY YFVTRTQLSK KKIGCGKKAK RKITRDNDSG SWKANAKGDI KDKEAKMVIG  120
EHQTLAFVKS EVNNKKKQKS GDGTSCDVVV PGSENSWIMT EYMLPEIEDK FRELVICKIH  180
MIENSNKKKK DDRHEASTSS NHQQHESALA SSFSDQQMQH PINEPHHQHE SALASSFSDQ  240
QLQHPINEPH HQHESVLASS FSDQQLQHQD HEASTYLNHI DSSTSEQQPI NNVDHGTLLA  300
PILGQQPMNL SDDLASFSSE EQPTNFIGKI QENNKKDDHE AFIPHHYEFL ADSSAKQQPV  360
NEDHRHVPEI PLIGSENNDQ VFEASRQVSE KDEQVYIDAP LEEEGGEWMQ RFTNMLKTIL  420
NTSSMPMEED VDMIYETPWI DQDLLDQYAT LRPQEWS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_09705.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453519.10.0PREDICTED: uncharacterized protein LOC108824593
TrEMBLA0A0D3ECL30.0A0A0D3ECL3_BRAOL; Uncharacterized protein
STRINGBo9g135820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.23e-15NAC domain containing protein 35