PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_09683.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YA | ||||||||
Protein Properties | Length: 276aa MW: 30196.9 Da PI: 10.1235 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 87.1 | 2.5e-27 | 121 | 180 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +++VN+KQy++I++RRq+Rak ++ ++k ++++rkpy+h+SRh hAlrRpRgsgGrF Rsa1.0_09683.1_g00001.1 121 GTIFVNSKQYHAIIRRRQSRAKTAAvldRNKQSSRGRKPYMHHSRHLHALRRPRGSGGRF 180 689********************9999899999**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.2E-27 | 118 | 183 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 32.49 | 119 | 183 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.3E-22 | 122 | 180 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.8E-20 | 122 | 144 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.8E-20 | 157 | 180 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MAMQTGPQIS WWNAFGSQPL PPLSLAGDSD SLGSAVETEH GVDKQSNSAT HLAFSLGDVK 60 SSRVVPKPHG AAFSMQPPCL ELGFTQQQIY PCVEREYYGV VSAYGTQSRV MLPLNMETED 120 GTIFVNSKQY HAIIRRRQSR AKTAAVLDRN KQSSRGRKPY MHHSRHLHAL RRPRGSGGRF 180 LKTKSGTSAK KADGTKQPQT QSQAVSQQSN SQNSEVLHPE SRTMNLTTGL NVSGSEVTSM 240 NYFLSSPVHS LGGMLTPSKW TASEAAVYNG CCYFKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 4e-15 | 120 | 181 | 2 | 60 | HAPB protein |
4g92_A | 4e-15 | 120 | 181 | 2 | 60 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_09683.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352991 | 1e-127 | AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018434875.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-2-like | ||||
Swissprot | Q9M9X4 | 1e-150 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A3N6S1M2 | 0.0 | A0A3N6S1M2_BRACR; Uncharacterized protein | ||||
STRING | Bo1g150420.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 1e-132 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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