PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09683.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 276aa    MW: 30196.9 Da    PI: 10.1235
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09683.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA87.12.5e-27121180258
                CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               +++VN+KQy++I++RRq+Rak ++   ++k ++++rkpy+h+SRh hAlrRpRgsgGrF
  Rsa1.0_09683.1_g00001.1 121 GTIFVNSKQYHAIIRRRQSRAKTAAvldRNKQSSRGRKPYMHHSRHLHALRRPRGSGGRF 180
                              689********************9999899999**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-27118183IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115232.49119183IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.3E-22122180IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-20122144IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-20157180IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAMQTGPQIS WWNAFGSQPL PPLSLAGDSD SLGSAVETEH GVDKQSNSAT HLAFSLGDVK  60
SSRVVPKPHG AAFSMQPPCL ELGFTQQQIY PCVEREYYGV VSAYGTQSRV MLPLNMETED  120
GTIFVNSKQY HAIIRRRQSR AKTAAVLDRN KQSSRGRKPY MHHSRHLHAL RRPRGSGGRF  180
LKTKSGTSAK KADGTKQPQT QSQAVSQQSN SQNSEVLHPE SRTMNLTTGL NVSGSEVTSM  240
NYFLSSPVHS LGGMLTPSKW TASEAAVYNG CCYFKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A4e-15120181260HAPB protein
4g92_A4e-15120181260HAPB protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_09683.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529911e-127AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434875.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like
SwissprotQ9M9X41e-150NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A3N6S1M20.0A0A3N6S1M2_BRACR; Uncharacterized protein
STRINGBo1g150420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.11e-132nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]