PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09394.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 179aa    MW: 20281.3 Da    PI: 10.194
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09394.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000964769123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C++ Fs+   L  H  +H
  Rsa1.0_09394.1_g00001.1 47 FECKTCNRKFSSFQALGGHRASH 69
                             89**********99999998887 PP
2zf-C2H216.52.4e-0594116123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg+sF +   L  H+r+H
  Rsa1.0_09394.1_g00001.1  94 HECSICGQSFGTGQALGGHMRRH 116
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.17E-846116No hitNo description
PfamPF139122.1E-114671IPR007087Zinc finger, C2H2
SMARTSM003550.194769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3254774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PfamPF139121.8E-1293118IPR007087Zinc finger, C2H2
SMARTSM003550.009794116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.55494121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKRERSEFEQ SIKNLDIARC LMILSQTSIV KQVDVNQYTE RNTSNRFECK TCNRKFSSFQ  60
ALGGHRASHK KPKLSVDQKE VKHVTNSYNG THVHECSICG QSFGTGQALG GHMRRHRSST  120
KVEPSQLISP VIPNVPVLKR CSSSKRVLSL DLNLTPLEND LETIFGKTFF PNIDMKFVV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_09394.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437483.11e-130PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD41e-105ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A0D3BR811e-120A0A0D3BR81_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CDI71e-120A0A3P6CDI7_BRAOL; Uncharacterized protein
STRINGBo4g030570.11e-121(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-107C2H2 family protein