PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09122.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 259aa    MW: 29939 Da    PI: 6.3572
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09122.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.11.7e-23114174259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dg+ WrKYGqK++k+s++ rsYY+C+++   +C++kk+v+  +++p +  +tY g+H+++
  Rsa1.0_09122.1_g00001.1 114 HDGFLWRKYGQKQIKESDHQRSYYKCAYTvdqKCEAKKQVQMIQNNPPLYSTTYFGRHTCQ 174
                              6**************************98889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-24106174IPR003657WRKY domain
PROSITE profilePS5081119.428108176IPR003657WRKY domain
SuperFamilySSF1182907.72E-23110175IPR003657WRKY domain
SMARTSM007742.8E-32113175IPR003657WRKY domain
PfamPF031061.6E-22115174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKSSQQKVME NLLHGHECAN QLRLIMDHHA ESDLSMERED LAKSVLHCFT DSLSILIDTN  60
DHNQDVDQSN NSSPQDSSHV LESSRKPLHK RGRKTSMVES SDYRRHESPN PIYHDGFLWR  120
KYGQKQIKES DHQRSYYKCA YTVDQKCEAK KQVQMIQNNP PLYSTTYFGR HTCQLHQAFE  180
TFPIDTSDSQ DSHMIRFDHP DSSTHQHQNQ IIQLKVEQMT MPSEKAEEWS SPSEYMSSEV  240
ACAVEAFGFN PARTSSDLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-151151741069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_09122.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300690.0KF430069.1 Brassica rapa WRKY transcription factor 62 (WRKY62) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480779.10.0PREDICTED: probable WRKY transcription factor 62
SwissprotQ9LZV61e-129WRK62_ARATH; Probable WRKY transcription factor 62
TrEMBLA0A078FH001e-175A0A078FH00_BRANA; BnaA09g24840D protein
STRINGBra023211.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145051522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-117WRKY DNA-binding protein 62