PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_09028.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 143aa MW: 16098.5 Da PI: 10.3833 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92.1 | 9.3e-29 | 14 | 88 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + kewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+v+s + vglkk+Lv+y g+a kg+ktdW+mhe+rl Rsa1.0_09028.1_g00001.1 14 VGAKEWYFFCMRGRKYKNSVRPNRVTGSGFWKATGIDKPVYS-NLDCVGLKKSLVYYLGSAGKGSKTDWMMHEFRL 88 4679**************************************.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 34.162 | 1 | 111 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.45E-35 | 8 | 110 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-13 | 18 | 88 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 143 aa Download sequence Send to blast |
MNIYCGLLLG VSNVGAKEWY FFCMRGRKYK NSVRPNRVTG SGFWKATGID KPVYSNLDCV 60 GLKKSLVYYL GSAGKGSKTD WMMHEFRLPS SSESPTQQAA EVWTLCRIFK RVTHHRNPTI 120 VQPNRRPVIT LTDSGSKTSS LDS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-32 | 15 | 111 | 69 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-32 | 15 | 111 | 69 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-32 | 15 | 111 | 69 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-32 | 15 | 111 | 69 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-32 | 15 | 111 | 72 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-32 | 15 | 111 | 72 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-32 | 15 | 111 | 72 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-32 | 15 | 111 | 72 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-32 | 15 | 111 | 72 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-32 | 15 | 111 | 72 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-32 | 15 | 111 | 72 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-32 | 15 | 111 | 72 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-32 | 15 | 111 | 69 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-32 | 15 | 111 | 69 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_09028.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK352673 | 1e-111 | AK352673.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-P15. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481287.1 | 3e-94 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 6e-80 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A078H0L4 | 5e-83 | A0A078H0L4_BRANA; BnaA04g24740D protein | ||||
TrEMBL | A0A397ZQL5 | 5e-83 | A0A397ZQL5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F9I0 | 5e-83 | M4F9I0_BRARP; Uncharacterized protein | ||||
STRING | Bra037743.1-P | 8e-84 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-82 | NAC domain containing protein 42 |