PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08789.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 291aa    MW: 33411 Da    PI: 7.7625
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08789.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.82.8e-2477134155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk...gLtlehvkSHLQkYRl 55 
                              kpr+ Wt+eLH+ F +ave++GG e+A+Pk il++m+ +   gLt+++v+SHLQkYRl
  Rsa1.0_08789.1_g00001.1  77 KPRMTWTSELHQLFEKAVEKMGGLEQAVPKLILKCMQEEmdvGLTRNNVASHLQKYRL 134
                              79**********************************9876679**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.67474137IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2374135IPR009057Homeodomain-like
SuperFamilySSF466891.77E-1375135IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-2077135IPR006447Myb domain, plants
PfamPF002492.3E-979133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MESTKRGSCN FLVKPVSKEI ISVLWQHVYR KKISVYSAES DPGENVGLDQ DLYQTNKEDS  60
SSGEQNSSYQ KENKSKKPRM TWTSELHQLF EKAVEKMGGL EQAVPKLILK CMQEEMDVGL  120
TRNNVASHLQ KYRLNSGKKS SVLQETREDS QWRNAGPNTA LTASKPLQNS SFNLHTRVPY  180
FANDQDARNG SMQYPSTNYI TTNNHFMTNS LAYLPYTDSF HHQQQQQQQQ FQHQQYSHSS  240
LQLPSITKQE SPYVPAAMEN PDLIPNQNSP HIDWADYLQG GLSYFDKTNR Y
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08789.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553351e-161AC155335.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' chromosome Cytogenetic chromosome 1 clone KBrH001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490129.10.0PREDICTED: putative two-component response regulator ARR20 isoform X1
SwissprotQ9LZJ82e-65ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLA0A078FEL11e-159A0A078FEL1_BRANA; BnaA09g40030D protein
STRINGBo8g098010.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-67response regulator 20