PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_08072.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 868aa MW: 95158.5 Da PI: 4.6562

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_08072.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89	3.7e-28	583	633	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek i le+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ Rsa1.0_08072.1_g00002.1 583 EKIIGLEVLQQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 633 7889*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	7.1E-4	190	284	IPR029016	GAF domain-like
PROSITE profile	PS51519	16.779	572	653	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-24	586	633	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.01E-21	758	855	No hit	No description
SMART	SM00666	3.2E-27	768	853	IPR000270	PB1 domain
PROSITE profile	PS51745	24.828	768	853	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.8E-20	769	852	No hit	No description
CDD	cd06407	2.40E-38	769	852	No hit	No description
Pfam	PF00564	3.9E-15	769	852	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 868 aa Download sequence Send to blast
MEDDGGGSDG GEGNGAFSPN SSFGAFPEMP MDLDFMDELL FDGCWLETTD LKQSEETASA 60 SNAMDDNNNN TPFLYFADNP FQEKTSNGEE TENQQEPCNQ AASSSLLEEA EVGRSWWIAP 120 RRGRSQGPSS SVKERLLRAI SGLDEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK 180 YSSLAQYRHV SETYNFPADE GSTEVGLPGR VFLQKLPEWT PDVRFFRSEE YPRIKEAQKC 240 DVRGSLAVPV FERGSGTCLG VVEIITTTQK MNYKPELENI CKALEAVDLR SSSNLMTPST 300 EFLQVYSDFY NAALPEISDF LATVCRSYDL PLALSWAPCD RQGKGGSRHS DENFSQCVST 360 IDSACFVLDE ESKCFLEACS EYHLLQGEGM VGKAFEETKL FFVPEVTIFS KTNYALAHHA 420 KVSGLHAALA VPLKGKSNGL VEFVLEFFFP KSCIDTEAKD EMLKSLSVTL QQDFKSSNLV 480 IDKDLELEVV LPVGEDMVLS ETEESLREVH MQDSSSMIKA NEKGKDPIDE SKISSGLDNS 540 QLDPIPSGGC RVDAGPSTEP ASTGGGNMLG SRRPGEKKRS KTEKIIGLEV LQQYFAGSLK 600 DAAKSIGVCP TTLKRICRHH GITRWPSRKI KKVGHSLKKL QVVMDSVQGA QGSIPLDSFY 660 TSFPALNSPN MSSSGPSLKS KEQLQHLNAP TSEDKPAPRS PSSSCSGSST NTANTLQVAE 720 NADAVLKKAQ GEAELHNENQ EETKSLKEPP LLENVPGSSS KSLRAGGGIK VKATFGEAII 780 RFTLPPSWGY RELEGEIARR FNIDDVSWFD LKYLDDDKEL VLLTCEGDLE ECIDIHRSSS 840 SQSQTIKISL HDAFQVKLGG SFGSSGAS

Sequence ? help Back to Top

Protein Sequence Length: 868 aa Download sequence Send to blast

MEDDGGGSDG GEGNGAFSPN SSFGAFPEMP MDLDFMDELL FDGCWLETTD LKQSEETASA  60
SNAMDDNNNN TPFLYFADNP FQEKTSNGEE TENQQEPCNQ AASSSLLEEA EVGRSWWIAP  120
RRGRSQGPSS SVKERLLRAI SGLDEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK  180
YSSLAQYRHV SETYNFPADE GSTEVGLPGR VFLQKLPEWT PDVRFFRSEE YPRIKEAQKC  240
DVRGSLAVPV FERGSGTCLG VVEIITTTQK MNYKPELENI CKALEAVDLR SSSNLMTPST  300
EFLQVYSDFY NAALPEISDF LATVCRSYDL PLALSWAPCD RQGKGGSRHS DENFSQCVST  360
IDSACFVLDE ESKCFLEACS EYHLLQGEGM VGKAFEETKL FFVPEVTIFS KTNYALAHHA  420
KVSGLHAALA VPLKGKSNGL VEFVLEFFFP KSCIDTEAKD EMLKSLSVTL QQDFKSSNLV  480
IDKDLELEVV LPVGEDMVLS ETEESLREVH MQDSSSMIKA NEKGKDPIDE SKISSGLDNS  540
QLDPIPSGGC RVDAGPSTEP ASTGGGNMLG SRRPGEKKRS KTEKIIGLEV LQQYFAGSLK  600
DAAKSIGVCP TTLKRICRHH GITRWPSRKI KKVGHSLKKL QVVMDSVQGA QGSIPLDSFY  660
TSFPALNSPN MSSSGPSLKS KEQLQHLNAP TSEDKPAPRS PSSSCSGSST NTANTLQVAE  720
NADAVLKKAQ GEAELHNENQ EETKSLKEPP LLENVPGSSS KSLRAGGGIK VKATFGEAII  780
RFTLPPSWGY RELEGEIARR FNIDDVSWFD LKYLDDDKEL VLLTCEGDLE ECIDIHRSSS  840
SQSQTIKISL HDAFQVKLGG SFGSSGAS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_08072.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018492394.1	0.0	PREDICTED: protein NLP1-like
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	M4CZL2	0.0	M4CZL2_BRARP; Uncharacterized protein
STRING	Bra009659.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]