PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08004.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 186aa    MW: 21140.6 Da    PI: 4.6926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08004.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-192068355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++ a+  l+g
  Rsa1.0_08004.1_g00002.1 20 YRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDVAAIHLRG 68
                             9******9.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-311977IPR001471AP2/ERF domain
PROSITE profilePS5103223.0511976IPR001471AP2/ERF domain
PfamPF008479.7E-131968IPR001471AP2/ERF domain
SMARTSM003803.8E-371982IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-222077IPR016177DNA-binding domain
CDDcd000187.21E-232078No hitNo description
PRINTSPR003672.1E-102031IPR001471AP2/ERF domain
PRINTSPR003672.1E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MENKNASQLE QPLSVDKVSY RGVRQRKWGK WVSEIREPGK KTRIWLGSYE TAEMAAAAYD  60
VAAIHLRGRG THLNFPELVD SFPQPQSSSS EHIQAAAQEA ALMFKPGVLS TEPDLGSGLG  120
HSRVGLSPDQ IQAINEFPLD SPRRGWMQDL EVNDYEELYG RIFGQCDRDE FFEMQQLESI  180
WDFNCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-182081668ATERF1
3gcc_A6e-182081668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08004.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490058.11e-138PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ282e-94ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLV4L1041e-100V4L104_EUTSA; Uncharacterized protein
STRINGXP_006415065.11e-101(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.13e-95ERF family protein