PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_07943.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 24663.8 Da PI: 9.0531 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.6e-19 | 66 | 114 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ a+ +++g Rsa1.0_07943.1_g00002.1 66 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFKTAEEAARAYDSAAIQIRG 114 9*******.**********954...4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.671 | 65 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-39 | 65 | 128 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 65 | 123 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-33 | 65 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-12 | 66 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.79E-35 | 66 | 124 | No hit | No description |
Pfam | PF00847 | 3.5E-13 | 66 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-12 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MCGGAVISDF IWSLRRPSFA EPDPSQLGYE GSVSIEKRTV CSVGGEKRKD GIEKKKGKKR 60 ERKNMYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFKTAEE AARAYDSAAI QIRGGKAKLN 120 FPNDDSTRRN CIIKNKEVGG GLINASDDQQ STPLLPPLLK EDKENQEVKQ LSEELMAYED 180 YMSFYQIPYL DGQSATEDVP QQISLIGNLW SFQDNNNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-23 | 66 | 122 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-22 | 66 | 124 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 62 | KKGKKRERK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_07943.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC002535 | 2e-61 | AC002535.3 Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete sequence. | |||
GenBank | AY074645 | 2e-61 | AY074645.1 Arabidopsis thaliana At2g47520/T30B22.18 mRNA, complete cds. | |||
GenBank | CP002685 | 2e-61 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480277.1 | 1e-142 | PREDICTED: ethylene-responsive transcription factor ERF071 | ||||
Swissprot | O22259 | 9e-63 | ERF71_ARATH; Ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | A0A0D3C6Q8 | 1e-121 | A0A0D3C6Q8_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g198690.1 | 1e-122 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 2e-51 | ERF family protein |
Publications ? help Back to Top | |||
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