PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_07811.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 294aa MW: 32119.2 Da PI: 6.7166

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_07811.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101	7.7e-32	33	87	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHe+Fveav++LGG+ekAtPkt++++m+vkgLtl+h+kSHLQk+R Rsa1.0_07811.1_g00001.1 33 KPRLRWTAELHEKFVEAVAELGGPEKATPKTLMRAMGVKGLTLYHLKSHLQKFRQ 87 79****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-29	30	87	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.271	30	90	IPR017930	Myb domain
SuperFamily	SSF46689	3.76E-15	32	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-22	33	87	IPR006447	Myb domain, plants
Pfam	PF00249	8.1E-8	35	85	IPR001005	SANT/Myb domain
Pfam	PF14379	7.1E-24	132	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MYSAILDGGA YHGPLDGTNL PGDACLVLTT DPKPRLRWTA ELHEKFVEAV AELGGPEKAT 60 PKTLMRAMGV KGLTLYHLKS HLQKFRQGRQ ACKESTDNSN KDASCVGESQ DTGSSSPSSL 120 KLAAQEQNES YQVTEALRAQ MEVQRRLHEQ LEHGQVQRRL QVRIEAQGKY LQSILEKACK 180 AFEEQAAMYT GLETAREELS ELAIKVSNSS QGATVPPYFD STKMMMMMMP SLSELEVVGI 240 DHKSNITTNC SVESSLTSNT NGSSVSAAAS MKKRHRGDNV AYEGSWTVPS STIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-20	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-20	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-20	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-20	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_07811.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018485481.1	0.0	PREDICTED: protein PHR1-LIKE 2-like isoform X1
Swissprot	Q94A57	1e-168	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A398A2K7	0.0	A0A398A2K7_BRACM; Uncharacterized protein
STRING	Bra001927.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.2	1e-170	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]