PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07742.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 388aa    MW: 43729.3 Da    PI: 8.6838
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07742.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.42.5e-25288369185
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                              rW+++ev+aLi+ r+e+ee+ +    k++ W+e+s++m+ +g+ers+k+Ckekwen+nk+yk++ e++kk+ +e+++t +yf++l
  Rsa1.0_07742.1_g00003.1 288 RWPQEEVQALIASRSEVEEKTGVH--KGAIWDEISARMKGKGYERSAKKCKEKWENMNKYYKRVMESSKKQ-PEHTKTRSYFEKL 369
                              8******************98776..9******************************************95.9**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.6E-4285345IPR001005SANT/Myb domain
SuperFamilySSF466897.47E-6287372IPR009057Homeodomain-like
CDDcd122034.18E-22287349No hitNo description
PfamPF138374.3E-19287369No hitNo description
Gene3DG3DSA:1.10.10.603.8E-5287343IPR009057Homeodomain-like
PROSITE profilePS500907.515288343IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MELLAGSCRK RLGDDFAEDA DPFGGSDWAY GGRSMRTQGG NDDALAALAD LAPPPQKLKP  60
IRCVVNKSPL VAEDRHPLDI LAGSLDRLPE MGFLEEGCFD APSGSKIADV EGSGQLMRRG  120
VGKGGLEREV VQGRVLGHGT SRDGVSLSSS VNSDSEEDSS QGVGKAVTGK RKRQTREKLE  180
HFMEKLVGTM MKRQEQMHNQ LINVMEKIER ERVRSEEAWR QQEMERMKQN EEARRQEMSR  240
SSSLISFIKS VIGEEIKIAQ PLQTISNNRC EWDQTQGEVT LVFPSGRRWP QEEVQALIAS  300
RSEVEEKTGV HKGAIWDEIS ARMKGKGYER SAKKCKEKWE NMNKYYKRVM ESSKKQPEHT  360
KTRSYFEKLG NFYKSNSVTA EHSGKKEQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07742.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834951e-139AC183495.1 Brassica oleracea Contig A, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439537.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLQ2A9Q80.0Q2A9Q8_BRAOL; DNA-binding protein-related
STRINGBo2g133550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-142Trihelix family protein