PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_07603.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 197aa MW: 22554.2 Da PI: 4.3765 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 29.7 | 1.7e-09 | 26 | 63 | 6 | 43 |
HHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH CS HSF_DNA-bind 6 lyeiledeelkeliswsengnsfvvldeeefakkvLpk 43 lye+++d+++++++swseng+sfvv de ef k +Lp+ Rsa1.0_07603.1_g00001.1 26 LYEMVDDPSTDSIVSWSENGKSFVVGDEVEFRKALLPS 63 8********************************99985 PP | |||||||
2 | HSF_DNA-bind | 45.1 | 2.6e-14 | 111 | 191 | 2 | 88 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 F++ +ye+++d+++++++swseng+sf+v++e+ef +vLp+ F + ++S++ + g++kv+++e+ we++ ++ Rsa1.0_07603.1_g00001.1 111 FIRDVYEMVDDPSTDSVVSWSENGKSFIVWKESEFLGDVLPSrlPFDYKDMTSLTTWFHAIGYSKVEESEH--------WEYTADY 188 99**************************************99667*********************99884........6666665 PP XXX CS HSF_DNA-bind 86 Fkk 88 + + Rsa1.0_07603.1_g00001.1 189 LVR 191 555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.9E-5 | 18 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.4E-10 | 21 | 63 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.76E-11 | 22 | 92 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.7E-7 | 26 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SMART | SM00415 | 1.7E-6 | 107 | 196 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 6.2E-17 | 107 | 194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.13E-13 | 110 | 195 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 6.9E-13 | 111 | 194 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MEEGSLPRMD GDSNGETLVS YYRSILYEMV DDPSTDSIVS WSENGKSFVV GDEVEFRKAL 60 LPSWGLGHLG FSQSEKCEYS CPYFMRGQPD LKPLAKKDLP PSLAIRRQPL FIRDVYEMVD 120 DPSTDSVVSW SENGKSFIVW KESEFLGDVL PSRLPFDYKD MTSLTTWFHA IGYSKVEESE 180 HWEYTADYLV RGQPPHP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_07603.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189596 | 1e-111 | AC189596.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014A02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486312.1 | 1e-132 | PREDICTED: heat shock factor protein-like | ||||
TrEMBL | A0A0D3C5F4 | 9e-96 | A0A0D3C5F4_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g190190.1 | 1e-96 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13231 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18870.1 | 1e-27 | HSF family protein |