PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07334.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 231aa    MW: 25934.8 Da    PI: 5.3337
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07334.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.3e-172069255
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             +y GVr+++ +gr++AeIr  +     +  r++lg+f+taeeAa a++ a++++ g
  Rsa1.0_07334.1_g00003.1 20 KYLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAALAYDVAARSISG 69
                             799******.**********66.....34**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-112068IPR001471AP2/ERF domain
CDDcd000181.55E-292076No hitNo description
Gene3DG3DSA:3.30.730.101.8E-272076IPR001471AP2/ERF domain
PROSITE profilePS5103220.6392077IPR001471AP2/ERF domain
SMARTSM003802.4E-312083IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-202077IPR016177DNA-binding domain
PRINTSPR003678.1E-92132IPR001471AP2/ERF domain
PRINTSPR003678.1E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MLKSRNKSKS KQEKKSEEVK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAALAY  60
DVAARSISGS LAKTNFFYTD NISLQTQPQD SSSDKALFVN PVASLKPNMS LGSSSFCFLQ  120
ENNHFVAGPV SSYIQEQQLS ANLTNSFSHC YDDDHHHVGK SKEISLPSLP NDMSSSLFGR  180
QDKTEEDGDA DKMNLGSVLT DEAHCFEYDF LLSGMPLSLL SDYNEDLPQI I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1816831078Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07334.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934541e-94AB493454.1 Arabidopsis thaliana At1g12890 mRNA for hypothetical protein, partial cds, clone: RAAt1g12890.
GenBankCP0026841e-94CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF13K231e-94AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439956.11e-153PREDICTED: ethylene-responsive transcription factor ERF088
SwissprotQ3E7032e-98ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A3P5YM101e-135A0A3P5YM10_BRACM; Uncharacterized protein
STRINGBra026949.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.11e-80ERF family protein