PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_07254.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 278aa MW: 31788.8 Da PI: 8.4015

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_07254.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	52.4	1.8e-16	22	71	54	103
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ ++++++gl Rsa1.0_07254.1_g00001.1 22 PQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLNSSKKIGLH 71 457**************************************999998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	14.375	1	112	IPR003441	NAC domain
Pfam	PF02365	2.9E-5	22	83	IPR003441	NAC domain
SuperFamily	SSF101941	3.27E-17	22	90	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGNNYVLPLH KTTKKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKSI 60 HLNSSKKIGL HDNENEIQED GWVVCRVFKK KNHFRGFHQE QDQDHHQYIS TNNDHDHHHH 120 QHHIESNSNN HSSLIPHSLD HHHMGRHVHM PLHEFANTLS HGSMHLPQLF SPDSAQPFVS 180 SINTTDIECS QNLLRLTSNN NYGGDWSFLD KLLTTNNMNQ QQQNQVQNHQ AKCFGDSSNN 240 GNDQAVTHDN GGSSSSPVNQ RFPFHYLGSN ANLPKFPK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_07254.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189312	8e-96	AC189312.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443794.1	1e-167	PREDICTED: protein SOMBRERO-like
Swissprot	Q9MA17	1e-121	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A0D3CVS7	1e-150	A0A0D3CVS7_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FWE5	1e-150	A0A3P6FWE5_BRAOL; Uncharacterized protein
STRING	Bo6g080930.1	1e-151	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6653	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	1e-103	NAC family protein

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]