PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_07254.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 278aa MW: 31788.8 Da PI: 8.4015 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 52.4 | 1.8e-16 | 22 | 71 | 54 | 103 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ ++++++gl Rsa1.0_07254.1_g00001.1 22 PQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLNSSKKIGLH 71 457**************************************999998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.375 | 1 | 112 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-5 | 22 | 83 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.27E-17 | 22 | 90 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGNNYVLPLH KTTKKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKSI 60 HLNSSKKIGL HDNENEIQED GWVVCRVFKK KNHFRGFHQE QDQDHHQYIS TNNDHDHHHH 120 QHHIESNSNN HSSLIPHSLD HHHMGRHVHM PLHEFANTLS HGSMHLPQLF SPDSAQPFVS 180 SINTTDIECS QNLLRLTSNN NYGGDWSFLD KLLTTNNMNQ QQQNQVQNHQ AKCFGDSSNN 240 GNDQAVTHDN GGSSSSPVNQ RFPFHYLGSN ANLPKFPK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_07254.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189312 | 8e-96 | AC189312.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018443794.1 | 1e-167 | PREDICTED: protein SOMBRERO-like | ||||
Swissprot | Q9MA17 | 1e-121 | SMB_ARATH; Protein SOMBRERO | ||||
TrEMBL | A0A0D3CVS7 | 1e-150 | A0A0D3CVS7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FWE5 | 1e-150 | A0A3P6FWE5_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g080930.1 | 1e-151 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6653 | 25 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-103 | NAC family protein |
Publications ? help Back to Top | |||
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