PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06759.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 106aa    MW: 12103.6 Da    PI: 4.4037
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06759.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.69.7e-1055106148
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikev.diykvePwdLp 48 
                              lp+G++F+Ptdee++ e+L++k+  +     + ++e+i +v di++++P++Lp
  Rsa1.0_06759.1_g00004.1  55 LPKGVKFEPTDEEVI-EHLQAKCGIDGlkpnHFIQEFIFSVeDINYIHPENLP 106
                              799************.99****87777445433334555556*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-942106IPR003441NAC domain
PROSITE profilePS5100513.11555106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MDRTWIVDGP WIVENVKNVS MSSDLQIEDC GAYINCPNCG HRNDNRNVLT PWPGLPKGVK  60
FEPTDEEVIE HLQAKCGIDG LKPNHFIQEF IFSVEDINYI HPENLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06759.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1637922e-35AL163792.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project).
GenBankAL1638172e-35AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBankCP0026882e-35CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473718.11e-74PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 8-like
TrEMBLA0A397ZVL24e-62A0A397ZVL2_BRACM; Uncharacterized protein
STRINGBra006257.1-P3e-61(Brassica rapa)
STRINGBo3g009820.11e-62(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2356234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.17e-57NAC domain containing protein 85