PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06690.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 341aa    MW: 39162.6 Da    PI: 7.0899
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06690.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.92e-5391381129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyW 83 
                              +ppGfrFhPtdeel+++yLkkk++ +k+e+ evi+evd++k+ePwdL++++k     ++ewyfFs++d+ky+tg+r+nrat++g+W
  Rsa1.0_06690.1_g00001.1   9 VPPGFRFHPTDEELLHYYLKKKISYHKFEM-EVIREVDLNKLEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATHAGFW 93 
                              69****************************.99**************964444222455*************************** PP

                      NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              katg+dk + + + +++g++ktLvfykgrap+g+ktdW+mheyrle
  Rsa1.0_06690.1_g00001.1  94 KATGRDKCIRN-TYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 138
                              **********9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-608160IPR003441NAC domain
PROSITE profilePS5100558.1089160IPR003441NAC domain
PfamPF023658.4E-2810137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ISYHKFEMEV IREVDLNKLE PWDLQERCKI  60
GSTPQNEWYF FSHKDRKYPT GSRTNRATHA GFWKATGRDK CIRNTYKKIG MRKTLVFYKG  120
RAPHGQKTDW IMHEYRLEDA DDSQGNSSED GWVVCRVFMK KNLFKVVTEG GSSINSTDHY  180
NHDASNNTNT LQARSFMHRD SPYQLVRNHG ATTFELNKPE LTLHQYPPIF HKPPSLGFDY  240
SSELPRDCES AASEGLQYQQ ACEPGLEVGT CDIVASHNHQ QGLGEWSMMD RLVTCHMGNE  300
DSSRGIRFED GNNNSSSVVQ PVPETNQLTL RSEMDFWGYS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-53916217167NO APICAL MERISTEM PROTEIN
1ut4_B6e-53916217167NO APICAL MERISTEM PROTEIN
1ut7_A6e-53916217167NO APICAL MERISTEM PROTEIN
1ut7_B6e-53916217167NO APICAL MERISTEM PROTEIN
3swm_A7e-53916220170NAC domain-containing protein 19
3swm_B7e-53916220170NAC domain-containing protein 19
3swm_C7e-53916220170NAC domain-containing protein 19
3swm_D7e-53916220170NAC domain-containing protein 19
3swp_A7e-53916220170NAC domain-containing protein 19
3swp_B7e-53916220170NAC domain-containing protein 19
3swp_C7e-53916220170NAC domain-containing protein 19
3swp_D7e-53916220170NAC domain-containing protein 19
4dul_A6e-53916217167NAC domain-containing protein 19
4dul_B6e-53916217167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06690.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1336810.0AY133681.1 Arabidopsis thaliana clone C103095 putative NAM/NAP (At4g10350) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475542.10.0PREDICTED: protein BEARSKIN2
SwissprotQ9SV870.0BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A397ZYP70.0A0A397ZYP7_BRACM; Uncharacterized protein
STRINGBra000709.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52132648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.10.0NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]