PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_06344.1_g00003.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 327aa MW: 34913.7 Da PI: 6.4091

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_06344.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	138	183	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ K +Ka++L + +eY++ Lq Rsa1.0_06344.1_g00003.1 138 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 183 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.08E-11	131	187	No hit	No description
SuperFamily	SSF47459	1.96E-16	131	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.028	133	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-16	135	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-9	138	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-13	139	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MREREAKERR QEEEMENGNG EGKGEFINQS NNNDYFLDSM SMLSSLPPCW DSSLPPPHPP 60 PPPQSLLHAL TVDASFPDQF HHTQANKPSS LTSLNTNESG GPSQDGLQGQ GTVSTTSAHV 120 ARQKPRVRAR RGQATDPHSI AERLRRERIA ERMKSLQELV PNTNKTDKAS MLDEIIEYVR 180 FLQLQVKVLS VSRLGGARAA GGPGFNGLTS EVGGRLNALS GPINGANGNG NATGSSNESL 240 RSTEQRVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAISS SSTASSHSRG ALFNPRSSVV 300 AAEETNVAVA AAEASTSMDD DVAASKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	147	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_06344.1_g00003.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013722225.1	1e-169	transcription factor bHLH82-like
Swissprot	Q9LSQ3	1e-165	BH082_ARATH; Transcription factor bHLH82
TrEMBL	A0A0D3EC94	1e-166	A0A0D3EC94_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EJI3	1e-166	A0A3P6EJI3_BRAOL; Uncharacterized protein
STRING	Bo9g133640.1	1e-166	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11585	17	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	1e-83	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]