PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_06169.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 324aa MW: 36215.6 Da PI: 5.3271

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_06169.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.8e-32	188	243	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++WtpeLH+rFv+a++qLGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+ Rsa1.0_06169.1_g00002.1 188 KQRRCWTPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 243 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.164	185	245	IPR017930	Myb domain
SuperFamily	SSF46689	6.0E-18	186	246	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.5E-28	187	246	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-26	188	243	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-9	190	241	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MGSLWDELSL GSRRPTSIPT TIYGFPTKAS VEKLEEEKMK IQGSDLDLPL CLQILNDAIS 60 YLKEESKRCS EMDTQPLLRD FISGDGPLLK REEKKKLELW REDDHIPNGR FSDTNNKLDV 120 ERNEEKPYGL SMLLNPGMKT PEVETGLGLG LASCSMVNGG RSKGIGFTSN VSVPQPPPYL 180 QQQALLRKQR RCWTPELHRR FVDALQQLGG PGVATPKQIR EHMQEEGLTN DEVKSHLQKY 240 RLHIRKSNSN PEKQSVVVLG FNLWNSSSQD EEEGGESSKR SNSQSDSPQG PLHLPCTTTT 300 TTGGDSSMED TEDAKSESFQ IGRD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00193	DAP	Transfer from AT1G49560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_06169.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018453875.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9FX84	1e-120	HHO6_ARATH; Transcription factor HHO6
TrEMBL	A0A0D3CPI0	1e-177	A0A0D3CPI0_BRAOL; Uncharacterized protein
STRING	Bo6g018370.1	1e-178	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13927	18	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49560.1	1e-94	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]