PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_06136.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 345aa MW: 39778.4 Da PI: 4.5005

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_06136.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.6	6.5e-13	92	174	4	86
trihelix 4 kqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +qe +L+e+ ++ +l+r++l+ +W ev++k+ +e ers +qC+ +nl+++ykk++ +k + ss++++f++l+ Rsa1.0_06136.1_g00002.1 92 EQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRSERSETQCRRMVDNLKRKYKKERIKVEK-SGLGSSKWSFFNKLD 174 688899***************************777889****************9977666.478999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-18	92	175	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGDSEDETGY PKKFYPLNRQ THPMYTRPIP KRHAYYHEEE EDDDEEEQED DGGGGGGGGG 60 YSHRFQKRLK PTKPVPSGYD FSSSGPSEAK AEQEAFVLLE VWGDRFLQLG RRSLRNEDWN 120 EVAEKVSEEL RSERSETQCR RMVDNLKRKY KKERIKVEKS GLGSSKWSFF NKLDMLLGGG 180 GSSAKPEFGL ACGVDSGEFV FMNTKVYLEK SNGFDEMMDS PGDSEEDDDE EEEVEYERRR 240 RRKGDDDAAS YKLLADSVER FGKVYEKMEK SKKEQMKELE KMRGEFQRDL ELQKKQIVER 300 AQTEIARLRE EDEEEEEENH RRDGGGGHES EDEGMGNDSD VNLSD

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGDSEDETGY PKKFYPLNRQ THPMYTRPIP KRHAYYHEEE EDDDEEEQED DGGGGGGGGG  60
YSHRFQKRLK PTKPVPSGYD FSSSGPSEAK AEQEAFVLLE VWGDRFLQLG RRSLRNEDWN  120
EVAEKVSEEL RSERSETQCR RMVDNLKRKY KKERIKVEKS GLGSSKWSFF NKLDMLLGGG  180
GSSAKPEFGL ACGVDSGEFV FMNTKVYLEK SNGFDEMMDS PGDSEEDDDE EEEVEYERRR  240
RRKGDDDAAS YKLLADSVER FGKVYEKMEK SKKEQMKELE KMRGEFQRDL ELQKKQIVER  300
AQTEIARLRE EDEEEEEENH RRDGGGGHES EDEGMGNDSD VNLSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_06136.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018485562.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A398A900	0.0	A0A398A900_BRACM; Uncharacterized protein
STRING	Bra001951.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-124	Trihelix family protein