PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_06124.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 238aa MW: 27121.3 Da PI: 8.5562 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18 | 5.1e-06 | 80 | 99 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +++++G C + +C+F+H+p Rsa1.0_06124.1_g00004.1 80 YYLKNGRCGFRLSCRFNHPP 99 8*****************97 PP | |||||||
2 | zf-CCCH | 30.9 | 4.7e-10 | 135 | 158 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + Cr +++t C+yG++C+F+H+ Rsa1.0_06124.1_g00004.1 135 ARDCRQYLQTRRCSYGPKCRFNHP 158 589********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 7.77 | 72 | 100 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7 | 76 | 99 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.19 | 86 | 98 | No hit | No description |
SMART | SM00356 | 0.23 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 135 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-7 | 135 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-5 | 138 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MSDGENSVME IEEAKKTDTR TESTSIEETE GHATDLRTRE SYGRTDRRRE RDPRSSGEKM 60 ENATQTSEYP ARTGVGDSYY YLKNGRCGFR LSCRFNHPPM RYGMVQPSPY PVSPHLPESS 120 QMRHEMVQPS PYPGARDCRQ YLQTRRCSYG PKCRFNHPHA PVLGSYKCEK GGELMGVDRV 180 SSMKSYQSTL VQRVNELSVF DVVRSNSHVK LLASPGSIRF DEQIKFVQLT DTTAFIPT |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_06124.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022544439.1 | 3e-65 | putative zinc finger CCCH domain-containing protein 9 | ||||
Refseq | XP_022552359.1 | 2e-65 | putative zinc finger CCCH domain-containing protein 9 | ||||
TrEMBL | A0A3P6B1E9 | 3e-51 | A0A3P6B1E9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EMX9 | 2e-51 | M4EMX9_BRARP; Uncharacterized protein | ||||
STRING | Bra030149.1-P | 4e-52 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14832 | 8 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 8e-13 | floral homeotic protein (HUA1) |