PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06013.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 229aa    MW: 24900.9 Da    PI: 5.1317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06013.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.5e-1565114155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  Rsa1.0_06013.1_g00001.1  65 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 114
                              5699**975..6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-1765122IPR016177DNA-binding domain
PROSITE profilePS5103219.30966122IPR001471AP2/ERF domain
SMARTSM003802.2E-2566128IPR001471AP2/ERF domain
PfamPF008472.5E-867114IPR001471AP2/ERF domain
PRINTSPR003671.1E-56778IPR001471AP2/ERF domain
CDDcd000181.94E-1567122No hitNo description
Gene3DG3DSA:3.30.730.109.2E-2567122IPR001471AP2/ERF domain
PRINTSPR003671.1E-5104124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSSSTDSPTT GNKQTTTFRL DSIALPSKSS DHQSPQSSPG SSSSPSPTPR PSTKRTTTGL  60
SGRHSFFRGI RLRNGKWVSE IREPRKTTRI WLGTYPVPEM AAAAYDVAAL ALKGPDAVLN  120
FPGLALTYVA PATNSAAEIR AAAARAAEMK QPDPVEKVMD PGQHGKEEEE KAMQLSSLEF  180
MDEEDMLDMP NLLTEMAEGM LMSPPRMTNP TMDDDSPENH VGDSLWSYK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06013.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452817.11e-168PREDICTED: ethylene-responsive transcription factor ERF025
SwissprotQ9FJ903e-97ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A397XMQ61e-117A0A397XMQ6_BRACM; Uncharacterized protein
STRINGBo9g104780.11e-111(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-82ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]