PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_05978.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 160aa MW: 18290.1 Da PI: 4.6382 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 5 | 47 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT Ed+ + +a +++ g +W++Ia ++ +++ ++++++ Rsa1.0_05978.1_g00004.1 5 QWTRSEDKMFEQALVLFPEGspnRWERIADQLQ--KSAGEVREHY 47 7*******************************9..8********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.085 | 1 | 51 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.0E-8 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.69E-12 | 4 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.0E-4 | 4 | 50 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.2E-6 | 5 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.21E-6 | 6 | 51 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MASSQWTRSE DKMFEQALVL FPEGSPNRWE RIADQLQKSA GEVREHYEAL VHDVLEIDSG 60 RVDVPDYMDD SAAGWDSAVA SHAQKYFLRQ NSVKKERKRS SIHDITTVDT NLAMPGSNMD 120 WSGQQESSVQ TQHQQQQSMS EFGQELMTPG GHYEEFGYRM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_05978.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013653806.1 | 4e-89 | transcription factor DIVARICATA-like | ||||
TrEMBL | A0A397ZYQ0 | 2e-87 | A0A397ZYQ0_BRACM; Uncharacterized protein | ||||
STRING | Bo3g002960.1 | 1e-87 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 3e-43 | MYB family protein |