PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_05623.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 327aa MW: 36319.6 Da PI: 6.9591

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_05623.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	9.9e-09	239	281	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ r+RR+ri +++ L++l+P +K++ a++L +A +Y+k L Rsa1.0_05623.1_g00001.1 239 AAARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 281 567*****************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.307	232	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.16E-11	235	286	No hit	No description
SuperFamily	SSF47459	8.51E-14	237	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-13	238	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.2E-6	239	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-12	240	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEGLESVYAQ AIYGMTRASK IKEHQGSDLI WGGNDLSSCF MSDLGVTDVG NRPASIDPSS 60 LDCLLSSTTT NSNNTSTEDE EGISMLFSDC QTLWSFGGVS SAESENREIT TETATTTTKP 120 KSLKRNRGNR DETRSHFRLV HPPQEDSEKG NFKLVYDENQ SKSKKPRTEK DIGGGSSNIS 180 FRQHSTSLSE NVETDAEAIA QMKEMIYTAA AFRPVNLGLE IVEKPKRKNV KISTEPQTAA 240 ARQRRERISE KIRVLQTLVP GGTKMDTASM LDEAANYLKF LRAQVKALEN LRPKLDPTNL 300 SFSSPSSFPL FHPSFLPFQN PNQIHHH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	246	RQRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_05623.1_g00001.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006406283.1	0.0	transcription factor bHLH87
Swissprot	Q8S3D2	0.0	BH087_ARATH; Transcription factor bHLH87
TrEMBL	V4NMP9	0.0	V4NMP9_EUTSA; Uncharacterized protein
STRING	XP_006406283.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7960	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-150	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]