PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05467.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 424aa    MW: 45564.1 Da    PI: 9.446
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05467.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29e-06324327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              elCr+f++ G  +yG+rC++ H++
  Rsa1.0_05467.1_g00002.1  3 KELCRNFQQ-G--RYGERCRYLHPQ 24
                             69*******.5..7*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.001124IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.15125IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MRKELCRNFQ QGRYGERCRY LHPQQTKPNN PFGFGTQSSR DQQQQNKTSS NPFGFGVQGG  60
SNSNNRPNQS QPFQNTWQRS PSSGGGASST QQSGKQTQQA DHKCTDPAAC KRFIQEDLKN  120
ERPMWKLTCY AHFKHLPCDV SGDISYEELR AMAYEESKRG VPLQSIVERE RNLQNAKVAE  180
FENFLRSPYR GPVTANQTTP SIFPPASQVN SPPGFSAFNQ QPAFPNTNAG GGLSSSGPPN  240
PFGRFNQQPN AFSLNTPQPA PSGPSGFQSQ PSSFGPGPVA PSGFNTQPSA AFKPSPFGPG  300
PVAPSGFQTQ PSAMFKPASF GPGPVAPSGF QSQPASFGPG PGLAAPAQNS NIFPSVTPTP  360
AFNTNQNNQT AFNFNSPVVD TTNTPSGTEL QAGGAPVDTS IWLKEKWNPG EIPEQAPPDA  420
FVHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05467.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018462789.10.0PREDICTED: zinc finger CCCH domain-containing protein 16-like
SwissprotQ9FWS31e-169C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLM4DH740.0M4DH74_BRARP; Uncharacterized protein
STRINGBra015851.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-131C3H family protein