PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_05375.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ZF-HD

Protein Properties

Length: 315aa MW: 34026.9 Da PI: 8.6169

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_05375.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.2	8.1e-33	48	104	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAa+lG+ha+DGCgE+mps++ +++++lkCaACgCHRnFHRre+++ Rsa1.0_05375.1_g00002.1 48 FTYKECLKNHAAALGSHALDGCGEYMPSPSLVsTDPTSLKCAACGCHRNFHRREPAD 104 68************************9988899****************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01566	1.3E-30	49	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.8E-27	49	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.766	50	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-21	50	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.93E-18	171	242	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-28	173	242	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	9.2E-25	181	238	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MDMTTHTTVT PPPKSPEPEP ETPTRIQPAK PLSFSNGVIK RHHPPLLFTY KECLKNHAAA 60 LGSHALDGCG EYMPSPSLVS TDPTSLKCAA CGCHRNFHRR EPADNDPSIP PPPLSSVAAT 120 VEYQPHHRHH PPPPPQQLAP PRSPNSSSPP PISSSYMLLS LSGTNNNNNL AFSGPHQTGS 180 RKRFRTKFSQ FQKEKMHEFA DRVGWKMQKR DEDDVREFCH QIGVDKSVLK VWMHNNKNTF 240 NRRDIQFSAA AGATEIHKID IGGGGVHAPV LAGETNNIGG NEQLRHSVSS GGGGFDSDSG 300 GGGVHGGNVN GSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-20	180	239	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269\|PubMed:17387478}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_05375.1_g00002.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellic acid (GA). {ECO:0000269\|PubMed:17387478}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478475.1	0.0	PREDICTED: zinc-finger homeodomain protein 10 isoform X1
Refseq	XP_018478476.1	0.0	PREDICTED: zinc-finger homeodomain protein 10 isoform X2
Swissprot	Q9FIW9	3e-98	ZHD10_ARATH; Zinc-finger homeodomain protein 10
TrEMBL	M4EA37	1e-138	M4EA37_BRARP; Uncharacterized protein
STRING	Bra025644.1-P	1e-138	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	2e-67	homeobox protein 34

Publications ? help Back to Top
Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology. Plant Signal Behav, 2014. 9(3): p. e28211 [PMID:24614501] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Kazama D, et al. Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis. Plants (Basel), 2013. 2(4): p. 769-85 [PMID:27137403]