PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05362.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 475aa    MW: 53015.9 Da    PI: 8.3098
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05362.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-08225245526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C+ f++ G C+ Gd+C +aHg
  Rsa1.0_05362.1_g00001.1 225 PCPEFRK-GSCPKGDSCEYAHG 245
                              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.37E-1327149IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00470101IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.204.7E-1370153IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.10670150IPR020683Ankyrin repeat-containing domain
PfamPF136374.6E-871125No hitNo description
CDDcd002041.72E-1172150No hitNo description
SMARTSM002480.14107139IPR002110Ankyrin repeat
SMARTSM003566.3E-5220246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976220247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-6225246IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5225245IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MCGSERNLCS SRTVRAKLEE GVDATIYLLE SAACDDLQSF KRQTEENSVD INEPGLWYCK  60
RVGSKKIGFQ ERTPLMVAAM YGSIQVLSYI ISTGRRSDVN RVSSDEEKLT ALHCAVSGCS  120
VSVVQVIKIL LDASASPNCL DAKGNKPVDL LEEVVKSVVT KYPADASLPD INEGVYVTDE  180
FRMFSFKVKP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYP YTCVPCPEFR KGSCPKGDSC  240
EYAHGVFESW LHPAQYRTRL RKEAMVSQPM GDNGVTLSPR NDCLWQNRVN SLTPPPLQLS  300
GSRLKSSLSA RDKDIKMELR LRGSYDSSSS VMQHQSPSRN HGFESSAAMA AAVMNARSSA  360
FARRSLSFKP APVATSNVVS EWGSPNGKLE WGMQREELNK MRRSASFGIH GNNNNVSRPV  420
RDYSDEPDVS WVNSLVKDSA PERAFGLNER VGNTFKLPLW AEQMYIDHEK QQIVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05362.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545951e-116AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621926.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
RefseqXP_013640482.10.0zinc finger CCCH domain-containing protein 29-like
RefseqXP_013716870.10.0zinc finger CCCH domain-containing protein 29-like
RefseqXP_022554838.10.0zinc finger CCCH domain-containing protein 29-like
RefseqXP_022566463.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A3N6R8580.0A0A3N6R858_BRACR; Uncharacterized protein
STRINGBo3g034750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein