PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05122.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 308aa    MW: 34887.8 Da    PI: 4.8454
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05122.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.8e-18108158256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              +y+GVr+++ +g+++AeIrd s+   r+r++lg+f taeeAa a+++a+ +l+g+
  Rsa1.0_05122.1_g00005.1 108 KYRGVRQRR-WGSFAAEIRDSST---RTRIWLGTFATAEEAAVAYDRAAIRLKGH 158
                              8*****998.**********543...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.745108165IPR001471AP2/ERF domain
SMARTSM003801.3E-34108171IPR001471AP2/ERF domain
PfamPF008476.5E-12108158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-28108164IPR001471AP2/ERF domain
CDDcd000181.39E-28108164No hitNo description
SuperFamilySSF541711.7E-19108165IPR016177DNA-binding domain
PRINTSPR003671.4E-9109120IPR001471AP2/ERF domain
PRINTSPR003671.4E-9131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MERRTRRVKF TEHCTVKPVP AKPSNGSPRV VRIAYTDPFA TDSSSDDEND NNNNNNLTVS  60
SPTPRVKRYV EEIRFGETKP KAARRARCKA EKGGRVERKA DVSTNPVKYR GVRQRRWGSF  120
AAEIRDSSTR TRIWLGTFAT AEEAAVAYDR AAIRLKGHNA LTNFLTPPPP PSPEETPPVI  180
DLKTVSRCDS VKQQSLCSPT SVLRFNVKEE TEYRTELETE PIDLAAEVKP TAVESLFQDP  240
YSLPELSLAG EYFWVSEFPP EPLFLDEIEI TEPVANRKED NEPEDFSFHL CGDFDASPWD  300
VDDFFEPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-18109164359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-18109164662ATERF1
3gcc_A1e-18109164662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05122.1_g00005.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446193.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotQ9M3741e-98CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A078ILP51e-155A0A078ILP5_BRANA; BnaC06g42850D protein
STRINGBra003462.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.19e-74cytokinin response factor 6