PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05068.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 303aa    MW: 33612.5 Da    PI: 10.3195
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05068.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.25.6e-1527121286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtse 74 
                              W+++ + +Li+a  ++  +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk++k++ ++    
  Rsa1.0_05068.1_g00002.1  27 WSEEATFTLIQAWGRRYVDLGRGSLRQKHWQEVANAVndrhfntgrhvsaAKSQPYRTDVQCKNRIDTLKKKYKAEKARVSES--- 109
                              ************************************************997777789*********************99983... PP

                 trihelix  75 ssstcpyfdqle 86 
                              + s +p+f++l+
  Rsa1.0_05068.1_g00002.1 110 RASAWPFFSDLD 121
                              4558******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2425123No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKDAVNDSFS PGSSRPSPST LSREDYWSEE ATFTLIQAWG RRYVDLGRGS LRQKHWQEVA  60
NAVNDRHFNT GRHVSAAKSQ PYRTDVQCKN RIDTLKKKYK AEKARVSESR ASAWPFFSDL  120
DELLRETFPA SSGAAPDNNQ RPSPSLPMSI VPVPVAPRSA ISRRPAPAIM SLGGDNLLGF  180
RGNLNAFAAA AAAAASPAYE EDSDGSRSRS SGGGGGGNRK REREGYKEVA EAIERFGKIY  240
EKVEERKRKE MVELEKQRMR FAKELECHRM QLFTEMQLRL HKLRRSSGSN GGPTTSSANA  300
GET
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05068.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445504.11e-180PREDICTED: trihelix transcription factor ASIL2
RefseqXP_018445505.11e-180PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A0D3CUM81e-166A0A0D3CUM8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GQQ11e-166A0A3P6GQQ1_BRAOL; Uncharacterized protein
STRINGBo6g075950.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-110sequence-specific DNA binding transcription factors