PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05018.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 549aa    MW: 59612.8 Da    PI: 8.3021
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05018.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.6e-30217276159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+++v+r+ +d +++++tYeg+Hnh+
  Rsa1.0_05018.1_g00003.1 217 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRRQVQRCVDDMSILITTYEGTHNHP 276
                              58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-31203278IPR003657WRKY domain
SuperFamilySSF1182902.48E-27210278IPR003657WRKY domain
PROSITE profilePS5081128.851212278IPR003657WRKY domain
SMARTSM007747.6E-37217277IPR003657WRKY domain
PfamPF031061.7E-26218276IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MEVLKKLTTS DTKDEFAGSA SCPGEGRIQE NRKVSRELES ANIEMSEMKE ENEKLKVMLE  60
HIESDYKSLR LRFLNKQQNS SAKPVRDDKN DQINAEFLGS SDQESEFVTL SLGIRGSNSP  120
SNSIANKEEK TKLISLGVEE DKELTNVDLT LGPNVGLAKE NSVISSLENT SSEEAPIMNK  180
VTRKRSSPSG DADDNGQQNL AKRARVCVRA RCDTLTMNDG CQWRKYGQKV AKGNPCPRAY  240
YRCTVAPGCP VRRQVQRCVD DMSILITTYE GTHNHPLPLS ATAMASTTAA AASMLLSGSS  300
TSGLDTEMIK NGMNFKLYDN SSRFINNPTA LSPLHPTVTL DLTAPPMPKP SSSPYSLNFN  360
KFPSLQRFPS TSLNFSASSS SSDSTSTINI PRIWGSGYAS FSPVTDSKVQ VGSPSFLNIG  420
KTLPQNPSLT ETLTKALTSD PSFHSVIAKA ISNMVGSGNG DQQSSWSGRN LMQNSSTSNS  480
LSIINQEAAD SNNKNKGCEG YFSSLLMSNM ANPGMLSPLN LPSSQLPFTM FTTSSSSTPS  540
FLNKEKKRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21204278174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05018.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437679.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG81e-163WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A078GUB20.0A0A078GUB2_BRANA; BnaCnng05780D protein
STRINGBra040505.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-134WRKY DNA-binding protein 72