PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_05004.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HSF

Protein Properties

Length: 144aa MW: 16548.5 Da PI: 10.6055

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_05004.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	42.8	1.4e-13	13	98	2	90
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH...HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk...yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 F +ly+i++d++ +++isws +n+nsfvv+d +++ +++L k + +n+ F+ +L gFk v + ++ eF+h+ Rsa1.0_05004.1_g00004.1 13 FYLQLYQIVDDRSSDQIISWSkTNNNSFVVWDLKRLRRDILLKsssVLLGKNLPKFMAKLRSHGFKTVFKGPGE-------LEFSHDD 93 8899***************9999************654448899***************99998.......9**** PP XXXXX CS HSF_DNA-bind 86 Fkkgk 90 F+++ Rsa1.0_05004.1_g00004.1 94 FTRDP 98 *9874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.6E-15	8	97	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.8E-8	9	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.18E-12	10	98	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.8E-11	13	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.4E-5	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.4E-5	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MVCKLPAGSS SSFYLQLYQI VDDRSSDQII SWSKTNNNSF VVWDLKRLRR DILLKSSSVL 60 LGKNLPKFMA KLRSHGFKTV FKGPGELEFS HDDFTRDPLM KKMMAKALAE KIERFDAQIK 120 TLKCRLKAKK ASIKVETLFQ NLCI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_05004.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018479641.1	1e-102	PREDICTED: heat stress transcription factor A-5-like
TrEMBL	A0A078HHE2	2e-79	A0A078HHE2_BRANA; BnaC04g32170D protein
TrEMBL	A0A0D3C016	2e-79	A0A0D3C016_BRAOL; Uncharacterized protein
STRING	Bo4g139630.1	3e-80	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	1e-22	Winged helix-turn-helix transcription repressor DNA-binding