PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04980.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 39243.2 Da PI: 8.3051 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.2 | 1.6e-53 | 18 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeelvv+yLk+k+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkat Rsa1.0_04980.1_g00001.1 18 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-AIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKAT 102 79****************************.88***************999999******************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk+vl++ ++++vg+kk Lvfy+g+ pkg k+dW+mheyrl Rsa1.0_04980.1_g00001.1 103 GTDKPVLASdGNQKVGVKKALVFYSGKPPKGIKSDWIMHEYRL 145 *******9967788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-65 | 14 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.105 | 18 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-28 | 19 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MESTDSSGGP PPPPQPNLPP GFRFHPTDEE LVVHYLKRKA ASAPLPVAII AEVDLYKFDP 60 WELPAKASFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLA SDGNQKVGVK 120 KALVFYSGKP PKGIKSDWIM HEYRLIDNKP NNRPPGCDFG NKKNSLRLDD WVLCRIYKKN 180 NSGRHVDNDK DHDMIDYIFR KIPPPLSMAG LHHNVSRSAS FFPGGYGIFS DGHHGLYEGS 240 GMINNNMAVR SNGAGSVNGD PDAVGNCLNP ASSSGPMMMA NLKRALPVPF WPLAEEEHDL 300 SQRKRFHGGA GGGECSNMSS SMMEETPPLM QQQVGVLGDG LFGTTSYQLP GLNFYSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-74 | 12 | 184 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-74 | 12 | 184 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-74 | 12 | 184 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-74 | 12 | 184 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-74 | 12 | 184 | 11 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-74 | 12 | 184 | 11 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00361 | DAP | Transfer from AT3G15510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04980.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF974762 | 0.0 | KF974762.1 Brassica napus NAC transcription factor 56-2 (NAC56-2.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490926.1 | 0.0 | PREDICTED: NAC transcription factor 56 | ||||
Swissprot | Q9LD44 | 0.0 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A3P6ENC5 | 0.0 | A0A3P6ENC5_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g127030.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 0.0 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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