PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04940.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 20954.4 Da PI: 9.5418 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 12 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a++ l+g Rsa1.0_04940.1_g00003.1 12 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARFLRG 61 6********.**********883....5***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.405 | 12 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-31 | 12 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-35 | 12 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-22 | 12 | 70 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.2E-13 | 12 | 61 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.41E-29 | 12 | 69 | No hit | No description |
PRINTS | PR00367 | 5.6E-11 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MASTTTCARE VHYRGVRKRP WGRYAAEIRD PWKKTRVWLG TFDTPEEAAL AYDGAARFLR 60 GIKAKTNFPP PLSLNLNLND FPPAPSATSA DNHHSQHHWF PAPLSITDNH HHHHHRVFLR 120 TGVLNDKTSD FSSTEAAPLY FANSPDVATS SSRVFEFPIM SSSPSSSSSA TARRGLAIDL 180 NEPPPLWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-21 | 8 | 69 | 1 | 63 | ATERF1 |
3gcc_A | 8e-21 | 8 | 69 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04940.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB055883 | 1e-62 | AB055883.1 Arabidopsis thaliana AtERF12 gene for ERF domain protein12, complete cds. | |||
GenBank | AC010155 | 1e-62 | AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence. | |||
GenBank | AY099798 | 1e-62 | AY099798.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds. | |||
GenBank | BT002604 | 1e-62 | BT002604.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-62 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018461132.1 | 1e-136 | PREDICTED: ethylene-responsive transcription factor 12-like | ||||
Swissprot | Q94ID6 | 5e-87 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A0D3BIM4 | 1e-101 | A0A0D3BIM4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A397YMY4 | 1e-101 | A0A397YMY4_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D328 | 1e-101 | M4D328_BRARP; Uncharacterized protein | ||||
STRING | Bra010881.1-P | 1e-102 | (Brassica rapa) | ||||
STRING | Bo3g143340.1 | 1e-102 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 6e-72 | ERF domain protein 12 |