PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04850.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 262aa MW: 30472.9 Da PI: 6.1788 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.1 | 2.8e-22 | 25 | 94 | 2 | 71 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatg 71 pGfrFhPtdeelv +yL kkv kk +++e+i+++diyk++PwdLp + +++eke yfF++r +++ +g Rsa1.0_04850.1_g00004.1 25 LPGFRFHPTDEELVGFYLSKKVLLKKsSKIDEIISQIDIYKFDPWDLP-RSRNTEKESYFFCRRGRNAGKG 94 59*******************887774778888***************.5567789********9987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.598 | 24 | 176 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.15E-27 | 24 | 141 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-10 | 26 | 91 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MEEAMGSWDT RREEQEEEGK QVLKLPGFRF HPTDEELVGF YLSKKVLLKK SSKIDEIISQ 60 IDIYKFDPWD LPRSRNTEKE SYFFCRRGRN AGKGSKTDWM MHEFRLPTAN DTIPGGSTLL 120 NPTPSSLLHA EVWTLCRIFK RNVSSRKYTP DWRELAGGKR MKPQQSKYQE AYISFGDNES 180 SSSTNNINVI ERKESYERNV FQLHQTHHDQ NQILPMDTTS TTTQVDNTVP HFSNDNIDNI 240 TYENWDELRS VVEFAFGPSS LS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-15 | 12 | 141 | 4 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04850.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189335 | 5e-63 | AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437965.1 | 1e-179 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | M4FE32 | 1e-163 | M4FE32_BRARP; Uncharacterized protein | ||||
STRING | Bra039353.1-P | 1e-164 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 1e-112 | NAC family protein |