PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04786.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | SBP | ||||||||
Protein Properties | Length: 381aa MW: 42201.8 Da PI: 8.1652 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.2 | 2.7e-39 | 158 | 234 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe dls+ak+yhr+h+vCe hsk+p+++v gle+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q Rsa1.0_04786.1_g00004.1 158 RCQVDGCELDLSSAKDYHRKHRVCENHSKCPKITVGGLERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKPQ 234 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.9E-33 | 151 | 220 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.71 | 156 | 233 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-36 | 157 | 234 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.2E-30 | 159 | 232 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MDCNMTSSLW DLEHLIMSNP SKTENDKRQP STEWEYQKGE GIESMFPSFA GLNRVSSGST 60 TGFSTNSSSP IFKLASESSP GDSFSNIDFV QGKTSSTALE VSAESDLCLK LGKQTYSEDY 120 WGRSNNEVSA VSTKLLAPCV VARKKSKAYG QSSMQVPRCQ VDGCELDLSS AKDYHRKHRV 180 CENHSKCPKI TVGGLERRFC QQCSRLHAVS EFDEKKRSCR KRLSHHNARR RKPQGVFPLN 240 PERDCNGRQY PNMLWNGLSL NTSSDEKYAA WSPTYYDTKP TQMESGFTLS FQRGCGPEEQ 300 LYAGSSRSFS AFQTSGGFSA GRSNSQLPGK GVGEYSGGLH ESQDFYSALS LLSTSSDSHG 360 TKHNPMVEPQ PTHGTFPTHF I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-25 | 159 | 232 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 214 | 231 | KKRSCRKRLSHHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04786.1_g00004.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438765.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 10 isoform X2 | ||||
Swissprot | Q8S9L0 | 0.0 | SPL10_ARATH; Squamosa promoter-binding-like protein 10 | ||||
TrEMBL | A0A397Y631 | 0.0 | A0A397Y631_BRACM; Uncharacterized protein | ||||
STRING | Bo5g051980.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5004 | 16 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 0.0 | squamosa promoter binding protein-like 10 |
Publications ? help Back to Top | |||
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