PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04616.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 168aa    MW: 19242 Da    PI: 8.4435
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04616.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.71.9e-3961393128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya....tgkrknratksgy 82 
                              +G+rF+Pt ee++++yLk+k+ +++  ++e+i+e++i+ ++P +Lp  +k+k+++  wyfF++r+  ++    ++k ++r+t sg+
  Rsa1.0_04616.1_g00002.1   6 VGYRFSPTGEEVINYYLKNKILDEPWLVNEAINEINICAYDPVSLPslSKLKSKDLVWYFFCRRECYASnatdKKKGTKRTTPSGF 91 
                              7************************999899***************5448888888*******98765533334567788999*** PP

                      NAM  83 Wkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              Wkatgkd+++++k  +g ++g+kktLv+++g+a +g+ t Wv+hey++
  Rsa1.0_04616.1_g00002.1  92 WKATGKDRRIKEKrgHGVEIGIKKTLVYHHGKAANGVWTPWVIHEYHI 139
                              ************9777788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.9354168IPR003441NAC domain
SuperFamilySSF1019419.68E-424144IPR003441NAC domain
PfamPF023658.2E-246139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MENNLVGYRF SPTGEEVINY YLKNKILDEP WLVNEAINEI NICAYDPVSL PSLSKLKSKD  60
LVWYFFCRRE CYASNATDKK KGTKRTTPSG FWKATGKDRR IKEKRGHGVE IGIKKTLVYH  120
HGKAANGVWT PWVIHEYHIT SLPPAQFLDL LDVDMGFDSS VSDLVDFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-19713918140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04616.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204391e-139KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457690.19e-92PREDICTED: NAC domain-containing protein 69-like
SwissprotQ9M1263e-65NAC69_ARATH; NAC domain-containing protein 69
TrEMBLM4F5H13e-82M4F5H1_BRARP; Uncharacterized protein
STRINGBra036327.1-P4e-83(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.14e-56NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]