PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04590.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 590aa    MW: 65958.6 Da    PI: 6.4443
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04590.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.7e-15393442355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Rsa1.0_04590.1_g00001.1 393 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 442
                              9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.84E-15264358No hitNo description
Gene3DG3DSA:3.30.730.104.6E-13265287IPR001471AP2/ERF domain
SMARTSM003801.4E-18265362IPR001471AP2/ERF domain
PROSITE profilePS5103216.463265356IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-9307357IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-13320356IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17391451IPR016177DNA-binding domain
CDDcd000188.58E-11391450No hitNo description
Gene3DG3DSA:3.30.730.104.1E-18392450IPR001471AP2/ERF domain
SMARTSM003804.7E-30392456IPR001471AP2/ERF domain
PROSITE profilePS5103219.269392450IPR001471AP2/ERF domain
PfamPF008478.3E-10393442IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MAHMTNWLTF SLSPMDMLRS SDDQSQFVSY DASSAASSPY LLDNFYGWTN QKPQEGEEEA  60
HISASMADST TLTTFVDPQN HPQSHIPKLE DFLGDFRYSD TSQTETQDSS SLTQLYDPRH  120
HQNLTGFYSD HNHDFKTMTG FQTAFSTNSG SDVDDSVSMG RTHVAGEYLG HVVESSGPEL  180
GFHGGPNTGG ALSLGVNINN NNTHRTSNDH NQITEHRYQF NNNVETIKSE REKTGSEKEK  240
PVLAVETSDC SNKKVADTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQARKGRQVI  300
SRSCMYLGMV CAIDGCWLSL ESTVYLGGYD KEDKAARAYD LAALKYWNTA ATTNFPITIY  360
TKELEEMKHM TKQEFIASLR RKSSGFSRGA SMYRGVTRHH QQGRWQARIG RVAGNKDLYL  420
GTFATEEEAA EAYDIAAIKF RGINAVTNFE MNHYDVESIM KSALPIGGAA KRLKLSLESE  480
QKPIIGHHQL HQFQQQQQLQ SSPNDSSGIN FALCPSSAAQ SQMIPCGIPF EAASLYHHQQ  540
QQQQNFFQHF PANAASDSTT GSDNNSNVQG SMGLMASNAA EFFLWPNQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04590.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475766.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A3P6A8W10.0A0A3P6A8W1_BRAOL; Uncharacterized protein
STRINGBo3g006680.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.30.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]